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Skill

ipd-skill

query IPD for HLA allele and cell metadata

Published by OpenAI Updated Apr 10
Covers HLA Life Sciences Bioinformatics IPD

Description

Submit compact IPD REST requests for HLA allele and cell-level metadata using the public IPD query API. Use when a user wants concise IPD summaries; save raw JSON or text only on request.

SKILL.md

Operating rules

  • Use scripts/rest_request.py for all IPD calls.
  • Use base_url=https://www.ebi.ac.uk/cgi-bin/ipd/api.
  • The most stable public routes are allele and cell.
  • For HLA allele browsing, pass project=HLA and keep limit modest.
  • Re-run requests in long conversations instead of relying on older tool output.

Execution behavior

  • Return concise markdown summaries from the script JSON by default.
  • Return raw JSON or text only if the user explicitly asks for machine-readable output.
  • Prefer these paths: allele, cell, and allele/download.

Input

  • Read one JSON object from stdin.
  • Required fields: base_url, path
  • Optional fields: method, params, headers, json_body, form_body, record_path, response_format, max_items, max_depth, timeout_sec, save_raw, raw_output_path
  • Common IPD patterns:
    • {"base_url":"https://www.ebi.ac.uk/cgi-bin/ipd/api","path":"allele","params":{"project":"HLA","limit":10},"record_path":"data","max_items":10}
    • {"base_url":"https://www.ebi.ac.uk/cgi-bin/ipd/api","path":"allele","params":{"project":"HLA","query":"contains(name,\"A*01\")","limit":10},"record_path":"data","max_items":10}
    • {"base_url":"https://www.ebi.ac.uk/cgi-bin/ipd/api","path":"cell","params":{"limit":10},"record_path":"data","max_items":10}

Output

  • Success returns ok, source, path, method, status_code, warnings, and either compact records, a compact summary, or text_head.
  • Use raw_output_path when save_raw=true.
  • Failure returns ok=false with error.code and error.message.

Execution

echo '{"base_url":"https://www.ebi.ac.uk/cgi-bin/ipd/api","path":"allele","params":{"project":"HLA","limit":10},"record_path":"data","max_items":10}' | python scripts/rest_request.py

References

  • No additional runtime references are required; keep the import package limited to this file and scripts/rest_request.py.

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