[{"data":1,"prerenderedAt":-1},["ShallowReactive",2],{"org-google-deepmind":3,"repo-skills-v-0-3-0":62},{"org":4,"repos":46},{"slug":5,"name":6,"logoUrl":7,"githubOrg":5,"website":8,"skillCount":9,"repoCount":10,"topRepos":11,"topTags":14,"lastUpdatedAt":45},"google-deepmind","Google DeepMind","https:\u002F\u002Fpexgzepcugksgbtrxkhf.supabase.co\u002Fstorage\u002Fv1\u002Fobject\u002Fpublic\u002Forg-logos\u002Fgoogle-deepmind.png","https:\u002F\u002Fdeepmind.google",38,1,[12],{"name":13,"skillCount":9},"google-deepmind\u002Fscience-skills",[15,18,21,24,27,30,33,36,39,42],{"slug":16,"name":17},"research","Research",{"slug":19,"name":20},"bioinformatics","Bioinformatics",{"slug":22,"name":23},"life-sciences","Life Sciences",{"slug":25,"name":26},"genetics","Genetics",{"slug":28,"name":29},"automation","Automation",{"slug":31,"name":32},"chemistry","Chemistry",{"slug":34,"name":35},"data-analysis","Data Analysis",{"slug":37,"name":38},"documentation","Documentation",{"slug":40,"name":41},"genomics","Genomics",{"slug":43,"name":44},"ncbi","NCBI","2026-07-12T07:52:17.355491",[47],{"name":48,"fullName":13,"repoUrl":49,"skillCount":9,"stars":50,"forks":51,"description":52,"topics":53,"topTags":54,"topTagCount":61,"lastUpdatedAt":45},"science-skills","https:\u002F\u002Fgithub.com\u002Fgoogle-deepmind\u002Fscience-skills",2333,234,"GDM Science Skills to speed up agentic scientific workflows with better grounding and higher token efficiency. Integrate insights from AlphaGenome, AFDB, UniProt and 30+ other databases and tools.",[],[55,56,57,58,59,60],{"slug":16,"name":17},{"slug":19,"name":20},{"slug":22,"name":23},{"slug":25,"name":26},{"slug":28,"name":29},{"slug":31,"name":32},37,{"items":63,"total":9},[64,76,89,107,119,134,149,160,172,187,198,208,219,230,243,253,263,278,293,305,317,328,342,352],{"slug":65,"name":65,"fn":66,"description":67,"org":68,"tags":69,"stars":50,"repoUrl":49,"updatedAt":75},"alphafold-database-fetch-and-analyze","retrieve and analyze AlphaFold protein structures","Retrieve and analyze AlphaFold predicted structures for a protein. Use when the user provides a specific UniProt Accession ID and wants structural confidence metrics (pLDDT), domain boundary analysis, or disorder assessment. Do not use if the user only has a protein name, gene name, or amino acid sequence — ask for a UniProt ID first.\n",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[70,72,73,74],{"name":20,"slug":19,"type":71},"tag",{"name":41,"slug":40,"type":71},{"name":23,"slug":22,"type":71},{"name":17,"slug":16,"type":71},"2026-07-12T07:51:51.827211",{"slug":77,"name":77,"fn":78,"description":79,"org":80,"tags":81,"stars":50,"repoUrl":49,"updatedAt":88},"alphagenome-single-variant-analysis","analyze genetic variant effects with AlphaGenome","Analyzes genetic variant effects on gene expression (RNA-seq), chromatin accessibility (DNASE), histone marks (ChIP), and transcription factors using the AlphaGenome API. Use when the user asks about non-coding variant effects, pathogenicity, clinical significance, disease associations, functional effects, gene expression changes, splicing disruption, or regulatory effects in promoters and enhancers. Also use for resolving biological terms to tissue\u002Fcell-type ontologies (UBERON\u002FCL) or analyzing variants in chr:pos:ref>alt format.\n",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[82,83,84,85],{"name":20,"slug":19,"type":71},{"name":26,"slug":25,"type":71},{"name":17,"slug":16,"type":71},{"name":86,"slug":87,"type":71},"RNA-seq","rna-seq","2026-07-12T07:51:39.494803",{"slug":90,"name":90,"fn":91,"description":92,"org":93,"tags":94,"stars":50,"repoUrl":49,"updatedAt":106},"chembl-database","query ChEMBL database for bioactive molecules","Query the ChEMBL database for bioactive molecules, drug targets, bioactivity data, approved drugs, and chemical structures. Use when the user asks about compounds, targets, IC50\u002FKi values, drug mechanisms, or structure searches.\n",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[95,98,99,102,105],{"name":96,"slug":97,"type":71},"ChEMBL","chembl",{"name":32,"slug":31,"type":71},{"name":100,"slug":101,"type":71},"Database","database",{"name":103,"slug":104,"type":71},"Pharmacology","pharmacology",{"name":17,"slug":16,"type":71},"2026-07-12T07:51:35.544306",{"slug":108,"name":108,"fn":109,"description":110,"org":111,"tags":112,"stars":50,"repoUrl":49,"updatedAt":118},"clinical-trials-database","query clinical trial data","Query ClinicalTrials.gov via APIv2. Use when you want to search for trials by condition, drug, location, status, or phase; retrieve trial details by NCT ID; check eligibility\u002Finclusion criteria; count trials across conditions or time periods; identify a sponsor's trial portfolio; find recruiting trials for patient matching.\n",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[113,116,117],{"name":114,"slug":115,"type":71},"Clinical Trials","clinical-trials",{"name":23,"slug":22,"type":71},{"name":17,"slug":16,"type":71},"2026-07-12T07:52:06.846705",{"slug":120,"name":120,"fn":121,"description":122,"org":123,"tags":124,"stars":50,"repoUrl":49,"updatedAt":133},"clinvar-database","retrieve clinical significance from ClinVar database","Use when needing clinical significance, pathogenicity classifications (e.g., Pathogenic, Benign, VUS), clinical evidence rationales, or finding \"hard positive\" benchmark controls for human genomic variants.\n",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[125,128,129,132],{"name":126,"slug":127,"type":71},"ClinVar","clinvar",{"name":26,"slug":25,"type":71},{"name":130,"slug":131,"type":71},"Healthcare","healthcare",{"name":17,"slug":16,"type":71},"2026-07-12T07:51:36.86094",{"slug":135,"name":135,"fn":136,"description":137,"org":138,"tags":139,"stars":50,"repoUrl":49,"updatedAt":45},"credentials","manage and verify API credentials safely","Instructions for handling API keys and credentials safely, verifying their presence, and prompting the user to add them if missing using a safe protocol.",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[140,143,146],{"name":141,"slug":142,"type":71},"Compliance","compliance",{"name":144,"slug":145,"type":71},"Operations","operations",{"name":147,"slug":148,"type":71},"Security","security",{"slug":150,"name":150,"fn":151,"description":152,"org":153,"tags":154,"stars":50,"repoUrl":49,"updatedAt":159},"dbsnp-database","search genetic variants in dbSNP database","Use when you want to look up, map, and search for short genetic variants (SNPs, indels) in NCBI's dbSNP database. Resolves between rsIDs, genomic coordinates in VCF format, and HGVS strings. For an rsID, returns variant type, gene associations, clinical significance, allele frequencies, and genomic coordinates (GRCh38).\n",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[155,156,157,158],{"name":20,"slug":19,"type":71},{"name":26,"slug":25,"type":71},{"name":44,"slug":43,"type":71},{"name":17,"slug":16,"type":71},"2026-07-12T07:51:33.054229",{"slug":161,"name":161,"fn":162,"description":163,"org":164,"tags":165,"stars":50,"repoUrl":49,"updatedAt":171},"embl-ebi-ols","search biomedical ontologies in EMBL-EBI OLS","Query and search the EMBL-EBI Ontology Lookup Service (OLS) for biomedical ontology terms, definitions, and hierarchies across 250+ ontologies (e.g., GO, DOID, HP). Use when the user asks to search for terms, retrieve details, navigate hierarchies (parents, children, ancestors), look up properties and individuals, get autocomplete suggestions, or access ontology metadata and statistics.\n",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[166,167,170],{"name":20,"slug":19,"type":71},{"name":168,"slug":169,"type":71},"Ontology","ontology",{"name":17,"slug":16,"type":71},"2026-07-12T07:51:59.368324",{"slug":173,"name":173,"fn":174,"description":175,"org":176,"tags":177,"stars":50,"repoUrl":49,"updatedAt":186},"encode-ccres-database","query ENCODE regulatory and experimental data","Query the ENCODE Registry of cis-Regulatory Elements (cCREs) via the SCREEN GraphQL API, or make custom queries to the ENCODE Portal REST API for experiments and files (ChIP-seq peaks, etc.). Use when you want to query regulatory annotations or raw experimental data across human cell types.\n",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[178,179,182,183],{"name":20,"slug":19,"type":71},{"name":180,"slug":181,"type":71},"GraphQL","graphql",{"name":17,"slug":16,"type":71},{"name":184,"slug":185,"type":71},"REST API","rest-api","2026-07-12T07:52:10.597139",{"slug":188,"name":188,"fn":189,"description":190,"org":191,"tags":192,"stars":50,"repoUrl":49,"updatedAt":197},"ensembl-database","query genomic and protein data from Ensembl","Query the Ensembl database to resolve gene, transcript, and protein IDs, fetch genomic or protein sequences, retrieve gene structures (exons), and get variant consequence and effect predictions (VEP). Use this skill as a primary ID translator, genomic sequence database and variant effect prediction tool.\n",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[193,194,195,196],{"name":20,"slug":19,"type":71},{"name":26,"slug":25,"type":71},{"name":23,"slug":22,"type":71},{"name":17,"slug":16,"type":71},"2026-07-12T07:51:41.645835",{"slug":199,"name":199,"fn":200,"description":201,"org":202,"tags":203,"stars":50,"repoUrl":49,"updatedAt":207},"foldseek-structural-search","perform 3D protein structural searches","Performs 3D structural searches of proteins against various databases (PDB, AlphaFold, CATH, MGnify, etc.) using the Foldseek API. Use ONLY when the user provides a physical 3D coordinate file (.cif, .mmcif, or .pdb) and wants to find structurally similar proteins. Do NOT use if the user only provides a protein sequence, gene name, or UniProt ID.\n",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[204,205,206],{"name":20,"slug":19,"type":71},{"name":23,"slug":22,"type":71},{"name":17,"slug":16,"type":71},"2026-07-12T07:52:09.354992",{"slug":209,"name":209,"fn":210,"description":211,"org":212,"tags":213,"stars":50,"repoUrl":49,"updatedAt":218},"gnomad-database","query genetic variant data from gnomAD","Query the Genome Aggregation Database (gnomAD). Use when determining the rarity or allele frequency of specific genetic variants, retrieving gene constraint metrics (pLI, LOEUF) to assess loss-of-function intolerance, finding variants in a genomic region or gene, or querying structural variants. Don't use for analyzing individual patient genomes, tracking somatic mutations in cancer (use COSMIC), or requesting raw sequencing reads (use ENA).\n",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[214,215,216,217],{"name":20,"slug":19,"type":71},{"name":26,"slug":25,"type":71},{"name":23,"slug":22,"type":71},{"name":17,"slug":16,"type":71},"2026-07-12T07:51:38.213009",{"slug":220,"name":220,"fn":221,"description":222,"org":223,"tags":224,"stars":50,"repoUrl":49,"updatedAt":229},"gtex-database","retrieve RNA expression and eQTL data","Use when you want to retrieve quantitative RNA expression data and variant eQTL information from the GTEx (Genotype-Tissue Expression) Project across 54 non-diseased tissue sites.\n",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[225,226,227,228],{"name":20,"slug":19,"type":71},{"name":23,"slug":22,"type":71},{"name":17,"slug":16,"type":71},{"name":86,"slug":87,"type":71},"2026-07-12T07:51:55.676755",{"slug":231,"name":231,"fn":232,"description":233,"org":234,"tags":235,"stars":50,"repoUrl":49,"updatedAt":242},"human-protein-atlas-database","retrieve protein expression data from HPA","Use when you want to retrieve semi-quantitative protein expression and spatial localisation data from the Human Protein Atlas (HPA).\n",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[236,237,240,241],{"name":20,"slug":19,"type":71},{"name":238,"slug":239,"type":71},"Human Protein Atlas","human-protein-atlas",{"name":23,"slug":22,"type":71},{"name":17,"slug":16,"type":71},"2026-07-12T07:51:53.1321",{"slug":244,"name":244,"fn":245,"description":246,"org":247,"tags":248,"stars":50,"repoUrl":49,"updatedAt":252},"interpro-database","annotate proteins and explore genomic data","Identify domains, families, and sites in proteins; find all proteins in a family or sharing a domain; explore species distribution for a domain; annotate genomes with protein families and GO terms. InterPro combines 14 databases (e.g., Pfam, CDD) into one searchable resource. InterPro-N significantly expands annotation and sequence coverage with deep learning. Includes domain architecture (IDA) search.\n",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[249,250,251],{"name":20,"slug":19,"type":71},{"name":26,"slug":25,"type":71},{"name":23,"slug":22,"type":71},"2026-07-12T07:52:03.083149",{"slug":254,"name":254,"fn":255,"description":256,"org":257,"tags":258,"stars":50,"repoUrl":49,"updatedAt":262},"jaspar-database","query JASPAR for transcription factor profiles","Query the JASPAR database for Transcription Factor (TF) binding profiles. Use when retrieving Position Frequency Matrices (PFMs) or Position Weight Matrices (PWMs) for specific TFs, resolving gene symbols to JASPAR Matrix IDs, or getting TF metadata. Supports multiple output formats (MEME, TRANSFAC, PFM, JASPAR, YAML).\n",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[259,260,261],{"name":20,"slug":19,"type":71},{"name":23,"slug":22,"type":71},{"name":17,"slug":16,"type":71},"2026-07-12T07:51:31.760241",{"slug":264,"name":264,"fn":265,"description":266,"org":267,"tags":268,"stars":50,"repoUrl":49,"updatedAt":277},"literature-search-arxiv","search and retrieve scientific papers from arXiv","Search for scientific papers, preprints, and publications on arXiv. Extract metadata, abstracts, and download full-text PDFs or HTML versions of papers. Use when the user asks to find research papers, literature, or specific arXiv IDs.\n",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[269,270,273,274],{"name":38,"slug":37,"type":71},{"name":271,"slug":272,"type":71},"PDF","pdf",{"name":17,"slug":16,"type":71},{"name":275,"slug":276,"type":71},"Search","search","2026-07-12T07:52:05.534669",{"slug":279,"name":279,"fn":280,"description":281,"org":282,"tags":283,"stars":50,"repoUrl":49,"updatedAt":292},"literature-search-biorxiv","search and download life science preprints","Browse, filter, and download life sciences, biology, and medical preprints from bioRxiv and medRxiv. Supports fetching paper metadata by DOI, and browsing by date range with category and keyword filters. Keyword filtering is local, so date ranges MUST be narrow (1-4 weeks) with a category to prevent timeouts.\n",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[284,287,288,291],{"name":285,"slug":286,"type":71},"bioRxiv","biorxiv",{"name":23,"slug":22,"type":71},{"name":289,"slug":290,"type":71},"medRxiv","medrxiv",{"name":17,"slug":16,"type":71},"2026-07-12T07:52:01.827847",{"slug":294,"name":294,"fn":295,"description":296,"org":297,"tags":298,"stars":50,"repoUrl":49,"updatedAt":304},"literature-search-europepmc","search and download scientific literature from Europe PMC","Search Europe PMC for scientific literature and download open-access full texts and PDFs. Retrieve full-text XML\u002Fplain text by PMCID, get citation lists and bibliography.\n",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[299,300,303],{"name":271,"slug":272,"type":71},{"name":301,"slug":302,"type":71},"PubMed","pubmed",{"name":17,"slug":16,"type":71},"2026-07-12T07:51:50.499997",{"slug":306,"name":306,"fn":307,"description":308,"org":309,"tags":310,"stars":50,"repoUrl":49,"updatedAt":316},"literature-search-openalex","search scholarly research papers with OpenAlex","Query the OpenAlex scholarly database for research papers, authors, institutions, topics, sources, publishers, funders, geo-locations, and keywords. Use when searching academic papers, resolving DOIs, downloading open-access PDFs, finding an author's publications, aggregating bibliometric data (citation counts, h-index, impact factor), exploring the research taxonomies, or performing DOI lookups.\n",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[311,312,315],{"name":38,"slug":37,"type":71},{"name":313,"slug":314,"type":71},"Reference","reference",{"name":17,"slug":16,"type":71},"2026-07-12T07:51:49.195707",{"slug":318,"name":318,"fn":319,"description":320,"org":321,"tags":322,"stars":50,"repoUrl":49,"updatedAt":327},"ncbi-sequence-fetch","retrieve sequences from NCBI databases","Retrieve protein and nucleotide sequences from NCBI databases using E-utilities. Supports direct accession lookup, CDS translation, gene+organism search, locus lookup, PubMed-linked sequences, patent protein extraction, and organism+length fallback search. Use when you need to fetch biological sequences by accession, gene name, locus tag, PubMed ID, or patent number.\n",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[323,324,325,326],{"name":20,"slug":19,"type":71},{"name":41,"slug":40,"type":71},{"name":44,"slug":43,"type":71},{"name":17,"slug":16,"type":71},"2026-07-12T07:51:46.693436",{"slug":329,"name":329,"fn":330,"description":331,"org":332,"tags":333,"stars":50,"repoUrl":49,"updatedAt":341},"openfda-database","query openFDA regulatory and product data","Query, search, and download data from the openFDA API for drugs, devices, foods, tobacco, cosmetics, animal and veterinary products, substances, and transparency data. Use for FDA adverse events, recalls, labeling, approvals, shortages, 510(k) clearances, NDC lookups, and any FDA safety or regulatory data query across all 28 API endpoints.\n",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[334,337,338],{"name":335,"slug":336,"type":71},"FDA","fda",{"name":23,"slug":22,"type":71},{"name":339,"slug":340,"type":71},"Regulatory Compliance","regulatory-compliance","2026-07-12T07:52:08.070765",{"slug":343,"name":343,"fn":344,"description":345,"org":346,"tags":347,"stars":50,"repoUrl":49,"updatedAt":351},"opentargets-database","query Open Targets for drug discovery","Query Open Targets Platform for target-disease associations, drug target discovery, tractability\u002Fsafety data, genetics\u002Fomics evidence, known drugs, for therapeutic target identification.\n",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[348,349,350],{"name":20,"slug":19,"type":71},{"name":23,"slug":22,"type":71},{"name":17,"slug":16,"type":71},"2026-07-12T07:51:44.181023",{"slug":353,"name":353,"fn":354,"description":355,"org":356,"tags":357,"stars":50,"repoUrl":49,"updatedAt":361},"pdb-database","search and download biomolecular 3D structures","Use when you want to search for or download experimentally-determined 3D structures for biomolecules (proteins, nucleic acids, bound ligands). Supports searching by sequence similarity, structure similarity, chemical and other attributes. Also use to get metadata about biomolecular structure experiments.\n",{"slug":5,"name":6,"logoUrl":7,"githubOrg":5},[358,359,360],{"name":20,"slug":19,"type":71},{"name":23,"slug":22,"type":71},{"name":17,"slug":16,"type":71},"2026-07-12T07:51:42.886325"]